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- Phocaeicola faecalis
- Enterococcus innesii
- Candidatus Sutterella
- Candidatus Merdibacter
- Candidatus Lachnoclostridium
- Candidatus Fournierella
- Candidatus Faecalibacterium
- Candidatus Alistipes
- Candidatus Agathobaculum
- Allobaculum mucolyticum
- Butyribacter sp.
- Barnesiellaceae bacterium
- Aliarcobacter butzleri
- Capnocytophaga canimorsus
- Bacteroides zoogleoformans
- Bacteroides humanifaecis
- Sphaerochaetaceae bacterium
- Staphylococcus borealis
- Turicibacter bilis
- Yersinia pseudotuberculosis